Flowchart basically put into my words my thoughts. Fujiko won't want to blow things up since that would blow her cover until said cover is already blown. Like in Cagliostro, she literally only started blowing things up when Lupin already was and just stripped her cover the night he showed up saying, "I didn't want to, but now that he's here, everything's about to explode anyway so I'll see ya~"

Anyways, yes, she'd basically be following the flow chart to a Tee. So long as she can keep the bureaucrat believing her the better in her opinion. She just has infinite backup plans as well.